Claude Code ensembl mcp server ensembl_query_region
How to: Claude Code ensembl mcp server ensembl_query_region
Add ensembl mcp server to Claude Code
-
01
Run this in your project directory.
claude mcp add --transport http ensembl-mcp-server https://ensembl.caseyjhand.com/mcp-
02
Restart your session so the server is picked up.
-
03
Ask for something ensembl_query_region does. Claude Code lists the server's tools on connect and calls ensembl_query_region itself — you do not invoke it by name.
-
04
If nothing happens, check the server is running and that ensembl mcp server's identifier in your config matches the one above exactly.
Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs
Set these first
ensembl mcp server will not start until these are set, so ensembl_query_region never becomes available.
-
ENSEMBL_BASE_URL -
MCP_LOG_LEVEL
Same tool, other clients
This list was read from the server itself, by connecting to it and calling tools/list on 24 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.