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mcp/harbor
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interpro mcp server MCP

v0.2.0 changelog · 6

io.github.cyanheads/interpro-mcp-server

Search InterPro entries, map domains onto proteins and PDB structures, and scan raw sequences.

transport:streamable-http runtime:npm tools:9
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Target client

run in your project directory 

claude mcp add --transport http interpro-mcp-server https://interpro.caseyjhand.com/mcp

setup guides: Claude Code Claude Desktop Cursor VS Code Zed Windsurf Cline Gemini CLI Grok ChatGPT Claude.ai LangChain

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

interpro_list_reference

interpro list reference

interpro_search_entries

interpro search entries

interpro_get_entry

interpro get entry

interpro_get_clan

interpro get clan

interpro_get_protein_domains

interpro get protein domains

interpro_find_proteins_by_domain

interpro find proteins by domain

interpro_get_structure_domains

interpro get structure domains

interpro_scan_sequence

interpro scan sequence

interpro_get_scan_result

interpro get scan result

All 9 tools, one page each

1 resource you attach as context

Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. Check the server's own documentation before granting access.