Noodle Biomedical Literature Discovery MCP for Gemini CLI

io.github.helena-bioinformatics/noodle

Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.

client:Gemini CLI transport:streamable-http tools:7

Install Noodle Biomedical Literature Discovery MCP in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "noodle": {
      "httpUrl": "https://api.helena.bio/noodle/v1/mcp"
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs