MaBoSS Boolean Network Simulator for Zed

io.github.marcorusc/maboss

MCP server for Boolean network simulation and attractor analysis using MaBoSS

client:Zed transport:stdio runtime:pypi

Install MaBoSS Boolean Network Simulator in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

{
  "context_servers": {
    "maboss": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers"
      ]
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs