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mcp/harbor
Cline

mol2 mcp for Cline

io.github.mrfentmen/mol2-mcp

MOL2 MCP: parse molecules, validate atoms, coordinates, bonds and counts.

client:Cline transport:stdio runtime:npm

Install mol2 mcp in Cline

~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json · windows: %APPDATA%\Code\User\globalStorage\saoudrizwan.claude-dev\settings\cline_mcp_settings.json 

{
  "mcpServers": {
    "mol2-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/mol2-mcp"
      ]
    }
  }
}

Cline's MCP Servers pane edits this file for you if you would rather not find it. Cline docs

mol2 mcp in other clients

mol2 mcp MCP server