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mcp/harbor
Gemini CLI

mzidentml mcp for Gemini CLI

io.github.mrfentmen/mzidentml-mcp

mzIdentML MCP: parse proteomics results, validate peptides, results and IDs.

client:Gemini CLI transport:stdio runtime:npm

Install mzidentml mcp in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json 

{
  "mcpServers": {
    "mzidentml-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/mzidentml-mcp"
      ]
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs

mzidentml mcp in other clients

mzidentml mcp MCP server