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mcp/harbor
Claude Desktop

pathway commons mcp for Claude Desktop

io.github.mrfentmen/pathway-commons-mcp

Pathway Commons graph search: find pathways, proteins and complexes by name

client:Claude Desktop transport:stdio runtime:npm

Install pathway commons mcp in Claude Desktop

~/Library/Application Support/Claude/claude_desktop_config.json · windows: %APPDATA%\Claude\claude_desktop_config.json 

{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

Settings → Developer → Edit Config opens this file. Restart the app after saving. Claude Desktop docs

pathway commons mcp in other clients

pathway commons mcp MCP server