pepxml mcp for Claude Desktop

io.github.mrfentmen/pepxml-mcp

pepXML MCP: parse search results, validate runs, spectrum queries and hits.

client:Claude Desktop transport:stdio runtime:npm

Install pepxml mcp in Claude Desktop

~/Library/Application Support/Claude/claude_desktop_config.json · windows: %APPDATA%\Claude\claude_desktop_config.json

{
  "mcpServers": {
    "pepxml-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pepxml-mcp"
      ]
    }
  }
}

Settings → Developer → Edit Config opens this file. Restart the app after saving. Claude Desktop docs