phylokit-mcp for Claude Code

io.github.musharna/phylokit-mcp

Phylogenetic inference via IQ-TREE 2 — never returns a topology without its support

client:Claude Code transport:stdio runtime:pypi

Install phylokit-mcp in Claude Code

run in your project directory

claude mcp add phylokit-mcp -e OMP_NUM_THREADS=<OMP_NUM_THREADS> -e MKL_NUM_THREADS=<MKL_NUM_THREADS> -- uvx phylokit-mcp

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs