Bioportal for VS Code
io.github.pipeworx-io/bioportal
BioPortal — NCBO's biomedical ontology repository (data.bioontology.org).
client:VS Code
transport:streamable-http
runtime:npm
tools:48
Install Bioportal in VS Code
.vscode/mcp.json
{
"servers": {
"bioportal": {
"type": "http",
"url": "https://gateway.pipeworx.io/bioportal/mcp"
}
}
}Requires agent mode. MCP: Open User Configuration puts the same block in every workspace. VS Code docs
What VS Code can do once it is connected
- ask_pipeworx
- ask_pipeworx_beta
- ask_pipeworx_grounded
- search_within
- deep_research
- discover_tools
- resolve_entity
- compare_entities
- subscribe
- unsubscribe
- list_subscriptions
- recent_alerts
- entity_profile
- recent_changes
- validate_claim
- company_facts
- company_register_search
- scan_dependency
- bet_research
- polymarket_arbitrage
- polymarket_edges
- polymarket_kalshi_spread
- polymarket_fill_risk
- polymarket_edge_tracker