Biosamples for Gemini CLI
io.github.pipeworx-io/biosamples
EBI BioSamples MCP.
client:Gemini CLI
transport:streamable-http
tools:38
Install Biosamples in Gemini CLI
~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json
{
"mcpServers": {
"biosamples": {
"httpUrl": "https://gateway.pipeworx.io/biosamples/mcp"
}
}
}Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs
What Gemini CLI can do once it is connected
- ask_pipeworx
- ask_pipeworx_beta
- ask_pipeworx_grounded
- search_within
- deep_research
- discover_tools
- resolve_entity
- compare_entities
- subscribe
- unsubscribe
- list_subscriptions
- recent_alerts
- entity_profile
- recent_changes
- validate_claim
- company_facts
- scan_dependency
- bet_research
- polymarket_arbitrage
- polymarket_edges
- polymarket_kalshi_spread
- polymarket_fill_risk
- polymarket_edge_tracker
- kalshi_weather_edge