Emdb for Gemini CLI

io.github.pipeworx-io/emdb

EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

client:Gemini CLI transport:streamable-http

Install Emdb in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "emdb": {
      "httpUrl": "https://gateway.pipeworx.io/emdb/mcp"
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs