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Gemini CLI

Gprofiler for Gemini CLI

io.github.pipeworx-io/gprofiler

g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…

client:Gemini CLI transport:streamable-http tools:39

Install Gprofiler in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "gprofiler": {
      "httpUrl": "https://gateway.pipeworx.io/gprofiler/mcp"
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs

What Gemini CLI can do once it is connected

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Gprofiler in other clients