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Gemini CLI

Protein Atlas for Gemini CLI

io.github.pipeworx-io/protein-atlas

Human Protein Atlas (HPA) MCP — keyless.

client:Gemini CLI transport:streamable-http

Install Protein Atlas in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "protein-atlas": {
      "httpUrl": "https://gateway.pipeworx.io/protein-atlas/mcp"
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs

Protein Atlas in other clients