String Db for Gemini CLI

io.github.pipeworx-io/string-db

STRING protein-protein interaction networks across ~12k organisms

client:Gemini CLI transport:streamable-http

Install String Db in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "string-db": {
      "httpUrl": "https://gateway.pipeworx.io/string-db/mcp"
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs