RCSB PDB for Zed

io.github.rcsb/rcsb-mcp

MCP server to search, inspect, and cross-reference RCSB Protein Data Bank structures

client:Zed transport:stdio runtime:pypi

Install RCSB PDB in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

{
  "context_servers": {
    "rcsb-mcp": {
      "command": "uvx",
      "args": [
        "rcsb-mcp"
      ]
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs