Skip to content
mcp/harbor
Zed

BioMCP-TS for Zed

io.github.yeyuan98/biomcp-ts

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

client:Zed transport:stdio runtime:npm

Install BioMCP-TS in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

{
  "context_servers": {
    "biomcp-ts": {
      "command": "npx",
      "args": [
        "-y",
        "biomcp"
      ],
      "env": {
        "ANALYSIS_BIOWASM": "<ANALYSIS_BIOWASM>",
        "ANALYSIS_R": "<ANALYSIS_R>",
        "DB_TYPE": "<DB_TYPE>",
        "NCBI_API_KEY": "<NCBI_API_KEY>",
        "S2_API_KEY": "<S2_API_KEY>",
        "OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
        "ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
        "DISGENET_API_KEY": "<DISGENET_API_KEY>"
      }
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs

BioMCP-TS in other clients

BioMCP-TS MCP server