Zed

STRING Database MCP Server for Zed

org.string-db/string-mcp

Query STRING interactions, enrichment, annotations, homology, and PPI networks.

client:Zed transport:streamable-http tools:17

Install STRING Database MCP Server in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

{
  "context_servers": {
    "string-mcp": {
      "url": "https://mcp.string-db.org/"
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs

What Zed can do once it is connected

STRING Database MCP Server in other clients

STRING Database MCP Server MCP server