ChatSpatial for Gemini CLI

io.github.cafferychen777/chatspatial

Schema-enforced spatial transcriptomics analysis with 20 tools and 66 methods via MCP

client:Gemini CLI transport:stdio runtime:pypi

Install ChatSpatial in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs