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pubchem mcp server MCP

v0.8.1 changelog · 9

io.github.cyanheads/pubchem-mcp-server

Search PubChem compounds, properties, safety data, bioactivity, and cross-references.

transport:streamable-http runtime:npm tools:10

Target client

run in your project directory

claude mcp add --transport http pubchem-mcp-server https://pubchem.caseyjhand.com/mcp

setup guides: Claude Code Claude Desktop Cursor VS Code Zed Windsurf Cline Gemini CLI Grok ChatGPT Claude.ai LangChain

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

pubchem_search_compounds

pubchem search compounds

pubchem_get_compound_details

pubchem get compound details

pubchem_get_compound_image

pubchem get compound image

pubchem_get_compound_3d_structure

pubchem get compound 3d structure

pubchem_get_compound_xrefs

pubchem get compound xrefs

pubchem_get_compound_safety

pubchem get compound safety

pubchem_get_bioactivity

pubchem get bioactivity

pubchem_get_compound_interactions

pubchem get compound interactions

pubchem_search_assays

pubchem search assays

pubchem_get_summary

pubchem get summary

All 10 tools, one page each

1 resource you attach as context

Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. Check the server's own documentation before granting access.