pubchem mcp server MCP Tools
pubchem mcp server exposes 10 tools. Each one has its own page with the configuration for every client that can run this server.
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pubchem_search_compoundspubchem search compounds
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pubchem_get_compound_detailspubchem get compound details
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pubchem_get_compound_imagepubchem get compound image
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pubchem_get_compound_3d_structurepubchem get compound 3d structure
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pubchem_get_compound_xrefspubchem get compound xrefs
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pubchem_get_compound_safetypubchem get compound safety
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pubchem_get_bioactivitypubchem get bioactivity
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pubchem_get_compound_interactionspubchem get compound interactions
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pubchem_search_assayspubchem search assays
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pubchem_get_summarypubchem get summary
This list was read from the server itself, by connecting to it and calling tools/list on 24 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.