Data Aggregator for Claude Code

io.github.musharna/data-aggregator-mcp

Find & fetch research datasets across 17 archives, omics registries, and literature sources.

client:Claude Code transport:stdio runtime:pypi

Install Data Aggregator in Claude Code

run in your project directory

NCBI_API_KEY

LLM_API_BASE

LLM_API_KEY

LLM_MODEL

EMBEDDING_API_BASE

EMBEDDING_API_KEY

EMBEDDING_MODEL

DATA_GOV_API_KEY

UNPAYWALL_EMAIL

NCBI_EMAIL

DATAVERSE_BASE_URL

CACHE_TTL_SECONDS

Held in this page only — never stored, logged, or sent anywhere but back to your screen.

claude mcp add data-aggregator-mcp -e NCBI_API_KEY=<NCBI_API_KEY> -e LLM_API_BASE=<LLM_API_BASE> -e LLM_API_KEY=<LLM_API_KEY> -e LLM_MODEL=<LLM_MODEL> -e EMBEDDING_API_BASE=<EMBEDDING_API_BASE> -e EMBEDDING_API_KEY=<EMBEDDING_API_KEY> -e EMBEDDING_MODEL=<EMBEDDING_MODEL> -e DATA_GOV_API_KEY=<DATA_GOV_API_KEY> -e UNPAYWALL_EMAIL=<UNPAYWALL_EMAIL> -e NCBI_EMAIL=<NCBI_EMAIL> -e DATAVERSE_BASE_URL=<DATAVERSE_BASE_URL> -e CACHE_TTL_SECONDS=<CACHE_TTL_SECONDS> -- uvx data-aggregator-mcp

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

Data Aggregator in other clients

Data Aggregator MCP server