Data Aggregator for VS Code
io.github.musharna/data-aggregator-mcp
Find & fetch research datasets across 17 archives, omics registries, and literature sources.
client:VS Code
transport:stdio
runtime:pypi
Install Data Aggregator in VS Code
.vscode/mcp.json
{
"inputs": [
{
"type": "promptString",
"id": "ncbi-api-key",
"description": "NCBI_API_KEY",
"password": true
},
{
"type": "promptString",
"id": "llm-api-base",
"description": "LLM_API_BASE",
"password": true
},
{
"type": "promptString",
"id": "llm-api-key",
"description": "LLM_API_KEY",
"password": true
},
{
"type": "promptString",
"id": "llm-model",
"description": "LLM_MODEL",
"password": true
},
{
"type": "promptString",
"id": "embedding-api-base",
"description": "EMBEDDING_API_BASE",
"password": true
},
{
"type": "promptString",
"id": "embedding-api-key",
"description": "EMBEDDING_API_KEY",
"password": true
},
{
"type": "promptString",
"id": "embedding-model",
"description": "EMBEDDING_MODEL",
"password": true
},
{
"type": "promptString",
"id": "data-gov-api-key",
"description": "DATA_GOV_API_KEY",
"password": true
},
{
"type": "promptString",
"id": "unpaywall-email",
"description": "UNPAYWALL_EMAIL",
"password": true
},
{
"type": "promptString",
"id": "ncbi-email",
"description": "NCBI_EMAIL",
"password": true
},
{
"type": "promptString",
"id": "dataverse-base-url",
"description": "DATAVERSE_BASE_URL",
"password": true
},
{
"type": "promptString",
"id": "cache-ttl-seconds",
"description": "CACHE_TTL_SECONDS",
"password": true
}
],
"servers": {
"data-aggregator-mcp": {
"type": "stdio",
"command": "uvx",
"args": [
"data-aggregator-mcp"
],
"env": {
"NCBI_API_KEY": "${input:ncbi-api-key}",
"LLM_API_BASE": "${input:llm-api-base}",
"LLM_API_KEY": "${input:llm-api-key}",
"LLM_MODEL": "${input:llm-model}",
"EMBEDDING_API_BASE": "${input:embedding-api-base}",
"EMBEDDING_API_KEY": "${input:embedding-api-key}",
"EMBEDDING_MODEL": "${input:embedding-model}",
"DATA_GOV_API_KEY": "${input:data-gov-api-key}",
"UNPAYWALL_EMAIL": "${input:unpaywall-email}",
"NCBI_EMAIL": "${input:ncbi-email}",
"DATAVERSE_BASE_URL": "${input:dataverse-base-url}",
"CACHE_TTL_SECONDS": "${input:cache-ttl-seconds}"
}
}
}
}
VS Code prompts for each input the first time the server starts, so no secret is written to the file. VS Code docs