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mcp/harbor
Gemini CLI

AMR (antimicrobial resistance) for Gemini CLI

io.github.pabloestepaa/amr-mcp

Antimicrobial resistance genes, sequences and literature from NCBI and UniProt

client:Gemini CLI transport:stdio runtime:pypi

Install AMR (antimicrobial resistance) in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

{
  "mcpServers": {
    "amr-mcp": {
      "command": "uvx",
      "args": [
        "amr-mcp"
      ],
      "env": {
        "NCBI_API_KEY": "<NCBI_API_KEY>",
        "NCBI_EMAIL": "<NCBI_EMAIL>"
      }
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs

AMR (antimicrobial resistance) in other clients

AMR (antimicrobial resistance) MCP server