bindingdb_by_pdb — Bindingdb MCP Tool
bindingdb_by_pdb
(bindingdb by pdb) is one of 47 tools on the
Bindingdb
MCP server. Connect the server and your client discovers it on the handshake.
by client
How to call bindingdb_by_pdb from your client
- Claude Code Bindingdb bindingdb_by_pdb run in your project directory
- Claude Desktop Bindingdb bindingdb_by_pdb ~/Library/Application Support/Claude/claude_desktop_config.json
- Cursor Bindingdb bindingdb_by_pdb ~/.cursor/mcp.json
- VS Code Bindingdb bindingdb_by_pdb .vscode/mcp.json
- Zed Bindingdb bindingdb_by_pdb ~/.config/zed/settings.json
- Windsurf Bindingdb bindingdb_by_pdb ~/.codeium/windsurf/mcp_config.json
- Cline Bindingdb bindingdb_by_pdb ~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json
- Gemini CLI Bindingdb bindingdb_by_pdb ~/.gemini/settings.json
- Grok Bindingdb bindingdb_by_pdb .mcp.json (in your project root)
- ChatGPT Bindingdb bindingdb_by_pdb Settings → Connectors → Advanced → Developer mode
- Claude.ai Bindingdb bindingdb_by_pdb Settings → Connectors → Add custom connector
- LangChain Bindingdb bindingdb_by_pdb pip install langchain-mcp-adapters
Fastest route
claude mcp add --transport http bindingdb https://gateway.pipeworx.io/bindingdb/mcp
Other tools on this server
- ask_pipeworx
- ask_pipeworx_beta
- ask_pipeworx_grounded
- search_within
- deep_research
- discover_tools
- resolve_entity
- compare_entities
- subscribe
- unsubscribe
- list_subscriptions
- recent_alerts
- entity_profile
- recent_changes
- validate_claim
- company_facts
- company_register_search
- scan_dependency
- bet_research
- polymarket_arbitrage
- polymarket_edges
- polymarket_kalshi_spread
- polymarket_fill_risk
- polymarket_edge_tracker
- kalshi_weather_edge
- resolution_audit
- resolution_diff
- release_calendar_markets
- prediction_calibration
- updown_venue_compare
- updown_divergence_rate
- archive_evidence
- archive_compare
- research_row
- classify_row
- pipeworx_trending
- suggest_questions
- generate_llms_txt
- ai_visibility_check
- scan_competitor_ai_presence
- pipeworx_feedback
- remember
- recall
- forget
- bindingdb_ligands_by_uniprot
- bindingdb_targets_by_smiles
This list was read from the server itself, by connecting to it and calling tools/list on 14 November 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.