deep_research — Ucsc Genome MCP Tool
deep_research
(deep research) is one of 40 tools on the
Ucsc Genome
MCP server. Connect the server and your client discovers it on the handshake.
by client
How to call deep_research from your client
- Claude Code Ucsc Genome deep_research run in your project directory
- Claude Desktop Ucsc Genome deep_research ~/Library/Application Support/Claude/claude_desktop_config.json
- Cursor Ucsc Genome deep_research ~/.cursor/mcp.json
- VS Code Ucsc Genome deep_research .vscode/mcp.json
- Zed Ucsc Genome deep_research ~/.config/zed/settings.json
- Windsurf Ucsc Genome deep_research ~/.codeium/windsurf/mcp_config.json
- Cline Ucsc Genome deep_research ~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json
- Gemini CLI Ucsc Genome deep_research ~/.gemini/settings.json
- Grok Ucsc Genome deep_research .mcp.json (in your project root)
- ChatGPT Ucsc Genome deep_research Settings → Connectors → Advanced → Developer mode
- Claude.ai Ucsc Genome deep_research Settings → Connectors → Add custom connector
- LangChain Ucsc Genome deep_research pip install langchain-mcp-adapters
Fastest route
claude mcp add --transport http ucsc-genome https://gateway.pipeworx.io/ucsc-genome/mcp
Other tools on this server
- ask_pipeworx
- ask_pipeworx_beta
- ask_pipeworx_grounded
- search_within
- discover_tools
- resolve_entity
- compare_entities
- subscribe
- unsubscribe
- list_subscriptions
- recent_alerts
- entity_profile
- recent_changes
- validate_claim
- company_facts
- scan_dependency
- bet_research
- polymarket_arbitrage
- polymarket_edges
- polymarket_kalshi_spread
- polymarket_fill_risk
- polymarket_edge_tracker
- kalshi_weather_edge
- resolution_audit
- resolution_diff
- release_calendar_markets
- pipeworx_trending
- suggest_questions
- generate_llms_txt
- ai_visibility_check
- scan_competitor_ai_presence
- pipeworx_feedback
- remember
- recall
- forget
- ucsc_genomes
- ucsc_tracks
- ucsc_track_data
- ucsc_sequence
This list was read from the server itself, by connecting to it and calling tools/list on 25 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.