Wikipathways for VS Code

io.github.pipeworx-io/wikipathways

WikiPathways MCP — open community pathway database.

client:VS Code transport:streamable-http

Install Wikipathways in VS Code

.vscode/mcp.json

{
  "servers": {
    "wikipathways": {
      "type": "http",
      "url": "https://gateway.pipeworx.io/wikipathways/mcp"
    }
  }
}

Requires agent mode. MCP: Open User Configuration puts the same block in every workspace. VS Code docs