Wikipathways for Zed

io.github.pipeworx-io/wikipathways

WikiPathways MCP — open community pathway database.

client:Zed transport:streamable-http

Install Wikipathways in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

{
  "context_servers": {
    "wikipathways": {
      "url": "https://gateway.pipeworx.io/wikipathways/mcp"
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs