ENCODE Toolkit for Claude Desktop

io.github.ammawla/encode-toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

client:Claude Desktop transport:stdio runtime:npm

Install ENCODE Toolkit in Claude Desktop

~/Library/Application Support/Claude/claude_desktop_config.json · windows: %APPDATA%\Claude\claude_desktop_config.json

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Settings → Developer → Edit Config opens this file. Restart the app after saving. Claude Desktop docs