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mcp/harbor
Cline

ENCODE Toolkit for Cline

io.github.ammawla/encode-toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

client:Cline transport:stdio runtime:npm

Install ENCODE Toolkit in Cline

~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json · windows: %APPDATA%\Code\User\globalStorage\saoudrizwan.claude-dev\settings\cline_mcp_settings.json 

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Cline's MCP Servers pane edits this file for you if you would rather not find it. Cline docs

ENCODE Toolkit in other clients

ENCODE Toolkit MCP server