ENCODE Toolkit for Windsurf

io.github.ammawla/encode-toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

client:Windsurf transport:stdio runtime:npm

Install ENCODE Toolkit in Windsurf

~/.codeium/windsurf/mcp_config.json · windows: %USERPROFILE%\.codeium\windsurf\mcp_config.json

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Global only — Windsurf has no per-project MCP config. Refresh Cascade after saving. Windsurf docs