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mcp/harbor
Cursor

ENCODE Toolkit for Cursor

io.github.ammawla/encode-toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

client:Cursor transport:stdio runtime:npm

Install ENCODE Toolkit in Cursor

~/.cursor/mcp.json · windows: %USERPROFILE%\.cursor\mcp.json 

{
  "mcpServers": {
    "encode-toolkit": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Use .cursor/mcp.json in a project root instead to scope it to that project. Cursor merges both. Cursor docs

ENCODE Toolkit in other clients

ENCODE Toolkit MCP server