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mcp/harbor
Claude Code

galaxy mcp for Claude Code

io.github.galaxyproject/galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

client:Claude Code transport:stdio runtime:pypi

Install galaxy mcp in Claude Code

run in your project directory

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

claude mcp add galaxy-mcp -e GALAXY_URL=<GALAXY_URL> -e GALAXY_API_KEY=<GALAXY_API_KEY> -- uvx galaxy-mcp

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

galaxy mcp in other clients

galaxy mcp MCP server