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mcp/harbor
Claude Desktop

galaxy mcp for Claude Desktop

io.github.galaxyproject/galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

client:Claude Desktop transport:stdio runtime:pypi

Install galaxy mcp in Claude Desktop

~/Library/Application Support/Claude/claude_desktop_config.json · windows: %APPDATA%\Claude\claude_desktop_config.json

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{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<GALAXY_URL>",
        "GALAXY_API_KEY": "<GALAXY_API_KEY>"
      }
    }
  }
}

Settings → Developer → Edit Config opens this file. Restart the app after saving. Claude Desktop docs

galaxy mcp in other clients

galaxy mcp MCP server