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mcp/harbor
Zed

galaxy mcp for Zed

io.github.galaxyproject/galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

client:Zed transport:stdio runtime:pypi

Install galaxy mcp in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

{
  "context_servers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<GALAXY_URL>",
        "GALAXY_API_KEY": "<GALAXY_API_KEY>"
      }
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs

galaxy mcp in other clients

galaxy mcp MCP server