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mcp/harbor
Windsurf

galaxy mcp for Windsurf

io.github.galaxyproject/galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

client:Windsurf transport:stdio runtime:pypi

Install galaxy mcp in Windsurf

~/.codeium/windsurf/mcp_config.json · windows: %USERPROFILE%\.codeium\windsurf\mcp_config.json

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<GALAXY_URL>",
        "GALAXY_API_KEY": "<GALAXY_API_KEY>"
      }
    }
  }
}

Global only — Windsurf has no per-project MCP config. Refresh Cascade after saving. Windsurf docs

galaxy mcp in other clients

galaxy mcp MCP server