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mcp/harbor
Gemini CLI

BioMCP for Gemini CLI

io.github.gucci10248/biomcp

50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more

client:Gemini CLI transport:stdio runtime:oci

Install BioMCP in Gemini CLI

~/.gemini/settings.json · windows: %USERPROFILE%\.gemini\settings.json 

{
  "mcpServers": {
    "biomcp": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "docker.io/jackgucci/biomcp:0.8.22"
      ]
    }
  }
}

Gemini expands $VAR and ${VAR} inside env values, so a secret can live in your shell rather than this file. Gemini CLI docs

BioMCP in other clients

BioMCP MCP server