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Zed

BioMCP for Zed

io.github.gucci10248/biomcp

50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more

client:Zed transport:stdio runtime:oci

Install BioMCP in Zed

~/.config/zed/settings.json · windows: %APPDATA%\Zed\settings.json

{
  "context_servers": {
    "biomcp": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "docker.io/jackgucci/biomcp:0.8.22"
      ]
    }
  }
}

Merge this into your existing settings object — do not replace the file. Zed docs

BioMCP in other clients