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mcp/harbor
VS Code

BioMCP for VS Code

io.github.gucci10248/biomcp

50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more

client:VS Code transport:stdio runtime:oci

Install BioMCP in VS Code

.vscode/mcp.json 

{
  "servers": {
    "biomcp": {
      "type": "stdio",
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "docker.io/jackgucci/biomcp:0.8.22"
      ]
    }
  }
}

Requires agent mode. MCP: Open User Configuration puts the same block in every workspace. VS Code docs

BioMCP in other clients

BioMCP MCP server