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mcp/harbor
VS Code

biopax mcp for VS Code

io.github.mrfentmen/biopax-mcp

BioPAX MCP: parse RDF models, validate objects, IDs and pathway classes.

client:VS Code transport:stdio runtime:npm

Install biopax mcp in VS Code

.vscode/mcp.json 

{
  "servers": {
    "biopax-mcp": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/biopax-mcp"
      ]
    }
  }
}

Requires agent mode. MCP: Open User Configuration puts the same block in every workspace. VS Code docs

biopax mcp in other clients

biopax mcp MCP server