biopax mcp for Windsurf

io.github.mrfentmen/biopax-mcp

BioPAX MCP: parse RDF models, validate objects, IDs and pathway classes.

client:Windsurf transport:stdio runtime:npm

Install biopax mcp in Windsurf

~/.codeium/windsurf/mcp_config.json · windows: %USERPROFILE%\.codeium\windsurf\mcp_config.json

{
  "mcpServers": {
    "biopax-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/biopax-mcp"
      ]
    }
  }
}

Global only — Windsurf has no per-project MCP config. Refresh Cascade after saving. Windsurf docs