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mcp/harbor
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BioMapper MCP

v1.9.0 changelog · 4

io.github.trentleslie/biomapper

Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.

transport:stdio runtime:pypi
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Target client

run in your project directory

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

claude mcp add biomapper -e BIOMAPPER_MCP_ROOTS=<BIOMAPPER_MCP_ROOTS> -e BIOMAPPER_API_KEY=<BIOMAPPER_API_KEY> -e BIOMAPPER_BASE_URL=<BIOMAPPER_BASE_URL> -e BIOMAPPER_MCP_HOME=<BIOMAPPER_MCP_HOME> -- uvx biomapper

setup guides: Claude Code Claude Desktop Cursor VS Code Zed Windsurf Cline Gemini CLI Grok LangChain

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

This listing does not declare its tools. Connect the server and your client will discover them on the handshake.