BioMapper for LangChain
io.github.trentleslie/biomapper
Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.
client:LangChain
transport:stdio
runtime:pypi
Install BioMapper in LangChain
pip install langchain-mcp-adapters
from langchain_mcp_adapters.client import MultiServerMCPClient
client = MultiServerMCPClient({
"biomapper": {
"transport": "stdio",
"command": "uvx",
"args": ["biomapper"],
}
})
tools = await client.get_tools()
get_tools() returns the server's tools as LangChain tools, ready for an agent. LangChain docs