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mcp/harbor
Claude Code

BioMapper for Claude Code

io.github.trentleslie/biomapper

Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.

client:Claude Code transport:stdio runtime:pypi

Install BioMapper in Claude Code

run in your project directory

Held in this page only — never stored, logged, or sent anywhere but back to your screen. 

claude mcp add biomapper -e BIOMAPPER_MCP_ROOTS=<BIOMAPPER_MCP_ROOTS> -e BIOMAPPER_API_KEY=<BIOMAPPER_API_KEY> -e BIOMAPPER_BASE_URL=<BIOMAPPER_BASE_URL> -e BIOMAPPER_MCP_HOME=<BIOMAPPER_MCP_HOME> -- uvx biomapper

Adds it for this project only. Append --scope user to make it available everywhere. Claude Code docs

BioMapper in other clients

BioMapper MCP server