BioMapper for Claude Desktop
io.github.trentleslie/biomapper
Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.
client:Claude Desktop
transport:stdio
runtime:pypi
Install BioMapper in Claude Desktop
~/Library/Application Support/Claude/claude_desktop_config.json · windows: %APPDATA%\Claude\claude_desktop_config.json
{
"mcpServers": {
"biomapper": {
"command": "uvx",
"args": [
"biomapper"
],
"env": {
"BIOMAPPER_MCP_ROOTS": "<BIOMAPPER_MCP_ROOTS>",
"BIOMAPPER_API_KEY": "<BIOMAPPER_API_KEY>",
"BIOMAPPER_BASE_URL": "<BIOMAPPER_BASE_URL>",
"BIOMAPPER_MCP_HOME": "<BIOMAPPER_MCP_HOME>"
}
}
}
}Settings → Developer → Edit Config opens this file. Restart the app after saving. Claude Desktop docs