batch — workbench MCP Tool
batch
(batch) is one of 144 tools on the
workbench
MCP server. Connect the server and your client discovers it on the handshake.
by client
How to call batch from your client
- Claude Code workbench batch run in your project directory
- Claude Desktop workbench batch ~/Library/Application Support/Claude/claude_desktop_config.json
- Cursor workbench batch ~/.cursor/mcp.json
- VS Code workbench batch .vscode/mcp.json
- Zed workbench batch ~/.config/zed/settings.json
- Windsurf workbench batch ~/.codeium/windsurf/mcp_config.json
- Cline workbench batch ~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json
- Gemini CLI workbench batch ~/.gemini/settings.json
- Grok workbench batch .mcp.json (in your project root)
- ChatGPT workbench batch Settings → Connectors → Advanced → Developer mode
- Claude.ai workbench batch Settings → Connectors → Add custom connector
- LangChain workbench batch pip install langchain-mcp-adapters
Fastest route
claude mcp add --transport http workbench https://seqbench.com/api/mcpOther tools on this server
- reverse_complement
- gc_content
- translate
- find_orfs
- format_sequence
- motif_finder
- reverse_translate
- random_sequence
- melting_temperature
- annealing_temperature
- oligo_analysis
- in_silico_pcr
- primer_design
- dna_molarity
- site_directed_mutagenesis
- oligo_pool_screen
- cross_dimer
- primer_specificity
- oligo_cofold
- barcode_design
- barcode_audit
- restriction_sites
- double_digest
- cloning_simulate
- plasmid_annotate
- construct_qc
- construct_autofix
- virtual_gel
- ligation_setup
- gel_band_size
- golden_gate_from_parts
- assembly_outcomes
- diagnostic_digest
- repeat_instability
- nonrepetitive_parts_find
- nonrepetitive_parts_design
- operon_scan
- operon_design
- synthesis_complexity
- band_traceback
- sanger_indel_spectrum
- outcome_deconvolve
- trace_secondary_peaks
- trace_diagnose
- primer_site_accessibility
- promoter_predict
- promoter_library_design
- cloning_next_observation
- read_placement_plan
- base_edit_quant
- sanger_knockin_quant
- editing_plate_quantify
- multiplex_panel_design
- cloning_diagnose
- protein_properties
- protein_hydrophobicity
- protease_digestion
- codon_optimize
- codon_adaptation_index
- pairwise_alignment
- multiple_sequence_alignment
- variant_comparator
- dot_plot
- identity_matrix
- sanger_plate_verify
- crispr_grna_design
- crispr_offtarget_check
- crispr_hdr_donor
- crispr_ontarget
- elsa_capacity
- elsa_design
- parse_genbank
- sequence_format_convert
- seqfile_stats
- parse_sanger_trace
- sanger_vs_reference
- parse_snapgene
- sanger_assemble
- characterize_sequence
- sequence_report
- cpg_islands
- parse_gff3
- blast_submit
- blast_poll
- od600_cells
- qpcr_ddct
- centrifuge_conversion
- solution_prep
- session_create
- session_get
- session_set
- session_run
- sequence_fetch
- sequence_search
- protein_annotate_submit
- protein_annotate_poll
- plasmid_identify
- plasmid_full_report
- plasmid_dossier
- plasmid_deep_annotate
- verify_construct
- verify_assembly
- golden_gate_fidelity
- golden_gate_design
- save_permalink
- sequencing_readback_verify
- whole_plasmid_verify
- web_search
- id_map_submit
- id_map_poll
- ortholog_map
- volcano_plot_data
- expression_heatmap_cluster
- functional_enrichment
- hgvs_convert
- fastq_qc_report
- fastq_trim
- alphafold_lookup
- export_plate_layout
- export_opentrons_protocol
- export_echo_picklist
- variant_annotate
- variant_to_construct
- gene_model
- gene_dossier
- gene_expression
- prime_editing_design
- prime_editing_twin_design
- prime_editing_efficiency
- base_editing_design
- sirna_design
- aso_design
- kasp_primer_design
- rna_fold
- rbs_predict
- rbs_design
- rbs_library_design
- rbs_occlusion
- riboswitch_states
- vector_library_search
- vector_library_get
- parts_library_search
- workflow
This list was read from the server itself, by connecting to it and calling tools/list on 24 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.