plasmid_deep_annotate — workbench MCP Tool
plasmid_deep_annotate
(plasmid deep annotate) is one of 144 tools on the
workbench
MCP server. Connect the server and your client discovers it on the handshake.
by client
How to call plasmid_deep_annotate from your client
- Claude Code workbench plasmid_deep_annotate run in your project directory
- Claude Desktop workbench plasmid_deep_annotate ~/Library/Application Support/Claude/claude_desktop_config.json
- Cursor workbench plasmid_deep_annotate ~/.cursor/mcp.json
- VS Code workbench plasmid_deep_annotate .vscode/mcp.json
- Zed workbench plasmid_deep_annotate ~/.config/zed/settings.json
- Windsurf workbench plasmid_deep_annotate ~/.codeium/windsurf/mcp_config.json
- Cline workbench plasmid_deep_annotate ~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json
- Gemini CLI workbench plasmid_deep_annotate ~/.gemini/settings.json
- Grok workbench plasmid_deep_annotate .mcp.json (in your project root)
- ChatGPT workbench plasmid_deep_annotate Settings → Connectors → Advanced → Developer mode
- Claude.ai workbench plasmid_deep_annotate Settings → Connectors → Add custom connector
- LangChain workbench plasmid_deep_annotate pip install langchain-mcp-adapters
Fastest route
claude mcp add --transport http workbench https://seqbench.com/api/mcpOther tools on this server
- reverse_complement
- gc_content
- translate
- find_orfs
- format_sequence
- motif_finder
- reverse_translate
- random_sequence
- melting_temperature
- annealing_temperature
- oligo_analysis
- in_silico_pcr
- primer_design
- dna_molarity
- site_directed_mutagenesis
- oligo_pool_screen
- cross_dimer
- primer_specificity
- oligo_cofold
- barcode_design
- barcode_audit
- restriction_sites
- double_digest
- cloning_simulate
- plasmid_annotate
- construct_qc
- construct_autofix
- virtual_gel
- ligation_setup
- gel_band_size
- golden_gate_from_parts
- assembly_outcomes
- diagnostic_digest
- repeat_instability
- nonrepetitive_parts_find
- nonrepetitive_parts_design
- operon_scan
- operon_design
- synthesis_complexity
- band_traceback
- sanger_indel_spectrum
- outcome_deconvolve
- trace_secondary_peaks
- trace_diagnose
- primer_site_accessibility
- promoter_predict
- promoter_library_design
- cloning_next_observation
- read_placement_plan
- base_edit_quant
- sanger_knockin_quant
- editing_plate_quantify
- multiplex_panel_design
- cloning_diagnose
- protein_properties
- protein_hydrophobicity
- protease_digestion
- codon_optimize
- codon_adaptation_index
- pairwise_alignment
- multiple_sequence_alignment
- variant_comparator
- dot_plot
- identity_matrix
- sanger_plate_verify
- crispr_grna_design
- crispr_offtarget_check
- crispr_hdr_donor
- crispr_ontarget
- elsa_capacity
- elsa_design
- parse_genbank
- sequence_format_convert
- seqfile_stats
- parse_sanger_trace
- sanger_vs_reference
- parse_snapgene
- sanger_assemble
- characterize_sequence
- sequence_report
- cpg_islands
- parse_gff3
- blast_submit
- blast_poll
- od600_cells
- qpcr_ddct
- centrifuge_conversion
- solution_prep
- session_create
- session_get
- session_set
- session_run
- sequence_fetch
- sequence_search
- protein_annotate_submit
- protein_annotate_poll
- plasmid_identify
- plasmid_full_report
- plasmid_dossier
- verify_construct
- verify_assembly
- golden_gate_fidelity
- golden_gate_design
- save_permalink
- sequencing_readback_verify
- whole_plasmid_verify
- web_search
- id_map_submit
- id_map_poll
- ortholog_map
- volcano_plot_data
- expression_heatmap_cluster
- functional_enrichment
- hgvs_convert
- fastq_qc_report
- fastq_trim
- alphafold_lookup
- export_plate_layout
- export_opentrons_protocol
- export_echo_picklist
- variant_annotate
- variant_to_construct
- gene_model
- gene_dossier
- gene_expression
- prime_editing_design
- prime_editing_twin_design
- prime_editing_efficiency
- base_editing_design
- sirna_design
- aso_design
- kasp_primer_design
- rna_fold
- rbs_predict
- rbs_design
- rbs_library_design
- rbs_occlusion
- riboswitch_states
- vector_library_search
- vector_library_get
- parts_library_search
- batch
- workflow
This list was read from the server itself, by connecting to it and calling tools/list on 24 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.