multiple_sequence_alignment — workbench MCP Tool
multiple_sequence_alignment
(multiple sequence alignment) is one of 144 tools on the
workbench
MCP server. Connect the server and your client discovers it on the handshake.
by client
How to call multiple_sequence_alignment from your client
- Claude Code workbench multiple_sequence_alignment run in your project directory
- Claude Desktop workbench multiple_sequence_alignment ~/Library/Application Support/Claude/claude_desktop_config.json
- Cursor workbench multiple_sequence_alignment ~/.cursor/mcp.json
- VS Code workbench multiple_sequence_alignment .vscode/mcp.json
- Zed workbench multiple_sequence_alignment ~/.config/zed/settings.json
- Windsurf workbench multiple_sequence_alignment ~/.codeium/windsurf/mcp_config.json
- Cline workbench multiple_sequence_alignment ~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json
- Gemini CLI workbench multiple_sequence_alignment ~/.gemini/settings.json
- Grok workbench multiple_sequence_alignment .mcp.json (in your project root)
- ChatGPT workbench multiple_sequence_alignment Settings → Connectors → Advanced → Developer mode
- Claude.ai workbench multiple_sequence_alignment Settings → Connectors → Add custom connector
- LangChain workbench multiple_sequence_alignment pip install langchain-mcp-adapters
Fastest route
claude mcp add --transport http workbench https://seqbench.com/api/mcpOther tools on this server
- reverse_complement
- gc_content
- translate
- find_orfs
- format_sequence
- motif_finder
- reverse_translate
- random_sequence
- melting_temperature
- annealing_temperature
- oligo_analysis
- in_silico_pcr
- primer_design
- dna_molarity
- site_directed_mutagenesis
- oligo_pool_screen
- cross_dimer
- primer_specificity
- oligo_cofold
- barcode_design
- barcode_audit
- restriction_sites
- double_digest
- cloning_simulate
- plasmid_annotate
- construct_qc
- construct_autofix
- virtual_gel
- ligation_setup
- gel_band_size
- golden_gate_from_parts
- assembly_outcomes
- diagnostic_digest
- repeat_instability
- nonrepetitive_parts_find
- nonrepetitive_parts_design
- operon_scan
- operon_design
- synthesis_complexity
- band_traceback
- sanger_indel_spectrum
- outcome_deconvolve
- trace_secondary_peaks
- trace_diagnose
- primer_site_accessibility
- promoter_predict
- promoter_library_design
- cloning_next_observation
- read_placement_plan
- base_edit_quant
- sanger_knockin_quant
- editing_plate_quantify
- multiplex_panel_design
- cloning_diagnose
- protein_properties
- protein_hydrophobicity
- protease_digestion
- codon_optimize
- codon_adaptation_index
- pairwise_alignment
- variant_comparator
- dot_plot
- identity_matrix
- sanger_plate_verify
- crispr_grna_design
- crispr_offtarget_check
- crispr_hdr_donor
- crispr_ontarget
- elsa_capacity
- elsa_design
- parse_genbank
- sequence_format_convert
- seqfile_stats
- parse_sanger_trace
- sanger_vs_reference
- parse_snapgene
- sanger_assemble
- characterize_sequence
- sequence_report
- cpg_islands
- parse_gff3
- blast_submit
- blast_poll
- od600_cells
- qpcr_ddct
- centrifuge_conversion
- solution_prep
- session_create
- session_get
- session_set
- session_run
- sequence_fetch
- sequence_search
- protein_annotate_submit
- protein_annotate_poll
- plasmid_identify
- plasmid_full_report
- plasmid_dossier
- plasmid_deep_annotate
- verify_construct
- verify_assembly
- golden_gate_fidelity
- golden_gate_design
- save_permalink
- sequencing_readback_verify
- whole_plasmid_verify
- web_search
- id_map_submit
- id_map_poll
- ortholog_map
- volcano_plot_data
- expression_heatmap_cluster
- functional_enrichment
- hgvs_convert
- fastq_qc_report
- fastq_trim
- alphafold_lookup
- export_plate_layout
- export_opentrons_protocol
- export_echo_picklist
- variant_annotate
- variant_to_construct
- gene_model
- gene_dossier
- gene_expression
- prime_editing_design
- prime_editing_twin_design
- prime_editing_efficiency
- base_editing_design
- sirna_design
- aso_design
- kasp_primer_design
- rna_fold
- rbs_predict
- rbs_design
- rbs_library_design
- rbs_occlusion
- riboswitch_states
- vector_library_search
- vector_library_get
- parts_library_search
- batch
- workflow
This list was read from the server itself, by connecting to it and calling tools/list on 24 September 2026. It is what
the server actually exposes, not what its listing claims.
Mutating and Read-only are read off each tool's name, not its schema — a hint, not a guarantee. The registry stores tool names only; connect the server for its live schemas.